PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052511.30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 181aa    MW: 20498.6 Da    PI: 9.8587
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052511.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12961255
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
           HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                  r+  +  Er+RR+r++  +++L +l+P+ +   p +  ls  + L kA +YIk+Lq
  EcC052511.30  9 RADRKTTERNRRNRMKALLSKLHSLVPPhC---PREStLSMPDQLGKAANYIKNLQ 61
                  6667889*********************88...55555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.04E-7565No hitNo description
SuperFamilySSF474593.66E-13776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.081760IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-12975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-81061IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00171366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MERKPGSSRA DRKTTERNRR NRMKALLSKL HSLVPPHCPR ESTLSMPDQL GKAANYIKNL  60
QVKVQKMREQ KERLLEIEKI NTTMNNGLTI GFKSPEIGIR KSGSILEVVL VTGLDGQFMF  120
NQTVRVIHEE GADVMNANFS YVGDAMLHTV HAKVGDGDST DERISQRLQE MVNDMLMELH  180
P
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057405.11e-131PREDICTED: uncharacterized protein LOC104445266
TrEMBLA0A059C9F01e-131A0A059C9F0_EUCGR; Uncharacterized protein
STRINGPOPTR_0011s05320.19e-67(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-41bHLH family protein